Experiment Visualization: Boxplots, Histogram and RNA Degeneration Curve: 1. Boxplot of raw Perfect match(PM) probe intensities : The raw PM intensity change in distribution for different hybridizations. 2. Boxplot of RMA expression values (log2-scale) : The distribution of RMA expression values for different hybridizations. 3. Boxplot of Affymetrix MAS5.0 expression (log2-scale) : The distribution of Affymetrix MAS5.0 expression values for different hybridizations. 4. Histogram of raw PM intensities : The raw PM intensity change in distribution for different hybridizations. 5. RNA digestion plot : The raw PM intensity change with regard to probe pairs from 5' to 3'. *Visualize hybridizations by scatter plots and MVA plots Check table below for more details on hybridizations. Click a hybridization link for their
Full Details Information of Hybridizations from BB4 Expression Summary Statistic by Hybridization: Hybridization T REP Min. 1st Qu. Median Mean 3rd Qu. Max 1 BB4_H1 1 1 0.070642.817 61.175.895 206.87.215 690.77.253 581.98.532 2977013.91 2 BB4_H2 1 2 0.12822.77 63.415.894 208.97.203 6757.244 585.58.505 2717013.9 3 BB4_H3 1 3 0.077352.821 50.695.79 187.87.207 663.97.249 590.88.633 2240013.86 4 BB4_H4 2 1 0.098892.767 57.075.806 204.97.228 641.97.254 614.38.613 2313013.93 5 BB4_H5 2 2 0.14822.821 49.925.807 196.77.222 646.57.256 607.58.613 2105013.96 6 BB4_H6 2 3 0.047392.835 46.155.71 185.27.208 637.47.241 614.88.674 1937013.95 7 BB4_H7 3 1 0.06472.735 52.185.847 192.97.201 645.67.25 597.18.584 2041013.93 8 BB4_H8 3 2 0.060992.802 57.825.89 189.77.183 654.97.254 576.78.537 2169013.98 9 BB4_H9 3 3 0.040282.798 45.45.743 179.37.191 633.27.242 590.98.649 1732014.04 10 BB4_H10 4 1 0.049272.816 53.95.812 2007.221 628.27.246 608.18.596 1686013.85 11 BB4_H11 4 2 0.070382.825 49.575.879 182.67.184 647.47.259 578.48.549 1987013.94 12 BB4_H12 4 3 0.046642.833 43.415.742 173.97.173 629.67.24 586.88.65 1566013.93 13 BB4_H13 5 1 0.051122.765 54.925.822 202.67.237 632.37.252 608.18.595 1778013.87 14 BB4_H14 5 2 0.056812.79 52.625.846 194.57.203 638.97.249 5938.564 1917013.97 15 BB4_H15 5 3 0.040942.58 48.325.767 183.97.201 6267.251 599.98.638 1746013.98 16 BB4_H16 6 1 0.057472.779 57.335.837 212.27.237 6277.252 622.78.59 1862013.94 17 BB4_H17 6 2 0.080082.696 55.345.849 1937.191 640.17.248 597.68.564 1982013.9 18 BB4_H18 6 3 0.050482.675 48.925.754 182.77.182 628.47.24 602.38.649 1753013.98 19 BB4_H19 7 1 0.079612.767 59.685.875 199.27.177 704.37.242 579.58.529 3033013.89 20 BB4_H20 7 2 0.081722.745 57.435.858 203.67.205 692.17.242 600.68.547 3039013.93 21 BB4_H21 7 3 0.12092.809 56.365.888 198.97.195 684.77.244 584.18.511 2788013.97 22 BB4_H22 8 1 0.079092.854 48.485.767 199.47.245 652.77.252 609.18.647 2118013.93 23 BB4_H23 8 2 0.059952.814 51.575.777 2027.23 637.47.25 6258.636 2017013.9 24 BB4_H24 8 3 0.09222.849 54.15.853 197.47.19 668.77.245 589.58.551 2274013.92 25 BB4_H25 9 1 0.059012.75 54.295.814 188.37.182 657.97.247 593.48.621 2316013.89 26 BB4_H26 9 2 0.055572.808 54.455.836 189.97.182 643.17.247 587.88.572 1921013.91 27 BB4_H27 9 3 0.0020592.769 54.645.876 185.67.164 6727.24 5698.507 2355013.94 28 BB4_H28 10 1 0.054772.754 55.055.799 196.37.199 649.87.247 605.68.612 2168013.89 29 BB4_H29 10 2 0.051222.807 55.75.865 195.27.196 651.17.25 596.78.562 2234013.87 30 BB4_H30 10 3 0.065492.764 58.095.887 197.27.201 675.37.255 5848.544 2627013.95 31 BB4_H31 11 1 0.045022.775 50.645.748 198.97.232 628.67.247 617.88.646 1748013.9 32 BB4_H32 11 2 0.052282.834 56.85.847 204.17.216 644.27.25 600.58.558 2058013.91 33 BB4_H33 11 3 0.070212.804 58.385.89 207.87.196 670.17.242 595.38.526 2478013.96 34 BB4_H34 12 1 0.072982.8 51.75.741 205.77.243 621.87.249 6258.665 1538013.89 35 BB4_H35 12 2 0.080472.785 62.585.864 212.77.238 636.97.26 613.78.577 2089013.92 36 BB4_H36 12 3 0.044462.79 55.585.797 215.97.228 633.57.245 621.98.607 1874013.95 37 BB4_H37 13 1 0.14922.792 61.115.932 197.47.184 723.47.242 563.78.456 3534013.9 38 BB4_H38 13 2 0.1022.856 58.275.916 196.57.207 716.87.253 569.88.509 3267013.92 39 BB4_H39 13 3 0.077272.725 53.95.866 188.47.189 715.87.24 568.28.521 3221013.91 40 BB4_H40 14 1 0.058862.81 54.985.831 203.97.222 651.17.251 617.18.584 2136013.94 41 BB4_H41 14 2 0.085232.876 59.915.872 204.57.23 660.77.26 605.48.573 2465013.98 42 BB4_H42 14 3 0.060352.75 51.35.753 198.97.219 654.67.245 601.18.629 2293013.99 43 BB4_H43 15 1 0.093792.786 59.315.896 196.47.23 651.27.278 582.28.571 2224013.89 44 BB4_H44 15 2 0.072482.84 55.615.862 186.57.175 643.97.246 578.68.538 1905013.91 45 BB4_H45 15 3 0.26172.75 54.825.793 189.37.184 644.17.238 588.48.592 1978013.9 46 BB4_H46 16 1 0.058592.809 56.825.864 193.17.202 653.67.251 588.28.562 2167013.86 47 BB4_H47 16 2 0.079712.827 58.25.833 193.87.192 648.37.244 574.68.551 2121013.93 48 BB4_H48 16 3 0.052552.696 49.185.799 186.17.198 651.17.248 5898.607 1979013.84 49 BB4_H49 17 1 0.15172.821 59.935.879 203.47.25 6477.28 6018.591 2208013.88 50 BB4_H50 17 2 0.066422.835 52.325.829 196.17.212 641.27.249 591.78.566 1865013.92 51 BB4_H51 17 3 0.094812.77 55.035.802 198.27.212 641.37.247 597.68.596 1837013.84 52 BB4_H52 18 1 0.054992.786 56.155.796 204.77.228 632.97.248 614.18.592 1845013.98 53 BB4_H53 18 2 0.093742.772 54.895.834 200.37.218 641.97.25 598.98.566 2010013.99 54 BB4_H54 18 3 0.065422.811 52.815.794 192.87.196 630.47.243 601.88.611 1749013.93 55 BB4_H55 19 1 0.065772.781 48.415.827 181.37.184 692.87.24 5738.574 2571013.91 56 BB4_H56 19 2 0.085732.815 54.445.86 197.27.205 695.57.247 594.18.561 2967013.95 57 BB4_H57 19 3 0.063612.792 54.215.893 184.77.176 724.37.239 551.98.488 3338013.99 58 BB4_H58 20 1 0.064172.773 49.665.753 201.87.247 643.77.252 618.18.662 1980013.99 59 BB4_H59 20 2 0.080762.748 54.125.792 201.57.232 647.97.254 615.58.639 2412013.98 60 BB4_H60 20 3 0.12332.756 52.095.816 195.97.211 678.97.249 596.58.594 2707013.91 61 BB4_H61 21 1 0.060992.812 49.035.804 188.47.198 655.97.25 599.38.632 2111013.95 62 BB4_H62 21 2 0.07258 43.8 175.1 638.5 593.4 17850 63 BB4_H63 21 3 0.050662.75 48.925.781 172.37.15 652.67.23 563.58.593 1984013.89 64 BB4_H64 22 1 0.061292.845 50.245.812 192.87.218 650.37.251 605.98.615 2054013.9 65 BB4_H65 22 2 0.070812.804 46.865.776 178.57.199 649.17.246 581.58.622 2055013.92 66 BB4_H66 22 3 0.047972.804 50.755.807 182.27.173 643.27.245 582.98.6 1912013.93 67 BB4_H67 23 1 0.02612.77 47.515.722 204.87.249 623.17.244 627.28.666 1541013.91 68 BB4_H68 23 2 0.049972.786 50.025.773 202.17.231 632.47.249 620.38.636 1925013.97 69 BB4_H69 23 3 0.092962.701 54.815.793 190.67.178 642.57.234 579.98.569 1934013.81 70 BB4_H70 24 1 0.048062.704 51.675.77 212.67.257 627.77.251 636.68.66 1779013.98 71 BB4_H71 24 2 0.073772.787 50.255.753 201.57.219 634.67.238 618.68.64 1987013.96 72 BB4_H72 24 3 0.04732.798 54.095.787 200.17.214 632.17.244 608.98.608 1766013.94 73 BB4_H73 25 1 0.063572.776 54.35.867 191.17.204 719.97.242 564.58.526 3280014 74 BB4_H74 25 2 0.060482.804 56.345.843 2017.206 676.67.242 588.18.546 2721013.92 75 BB4_H75 25 3 0.041252.81 50.195.811 194.77.214 655.57.249 593.88.602 2058013.95 76 BB4_H76 26 1 0.059192.735 49.045.797 191.57.215 672.67.25 597.98.612 2536013.96 77 BB4_H77 26 2 0.056422.825 55.065.82 201.37.224 649.47.254 6088.602 2252013.98 78 BB4_H78 26 3 0.046822.737 47.385.737 196.37.231 634.87.246 618.68.667 1872013.96 79 BB4_H79 27 1 0.053792.754 54.835.833 190.27.207 655.57.247 580.58.576 2208013.87 80 BB4_H80 27 2 0.056112.832 52.735.847 182.47.181 650.97.246 578.98.556 1992013.95 81 BB4_H81 27 3 0.046112.743 46.095.734 176.77.173 644.37.231 582.28.635 1934014.03 82 BB4_H82 28 1 0.058042.755 53.815.807 195.17.2 680.57.233 579.18.556 2719014 83 BB4_H83 28 2 0.15582.839 55.645.831 198.77.21 639.97.248 590.98.572 1924013.91 84 BB4_H84 28 3 0.045052.758 47.095.751 188.57.209 630.77.243 588.68.638 1695013.99 85 BB4_H85 29 1 0.07242.822 60.65.848 206.27.227 659.27.254 600.68.569 2449013.95 86 BB4_H86 29 2 0.057972.73 57.165.829 204.27.215 633.17.248 6088.577 1916013.88 87 BB4_H87 29 3 0.044192.757 45.795.714 189.57.212 620.47.241 610.28.665 1502013.86 88 BB4_H88 30 1 0.048332.767 49.835.76 203.57.234 628.87.247 623.58.649 1665013.98 89 BB4_H89 30 2 0.048242.767 51.185.77 2047.228 619.17.246 624.88.639 1568013.9 90 BB4_H90 30 3 0.051632.629 51.425.748 201.77.228 620.37.247 627.38.659 1610013.92 91 BB4_H91 31 1 0.063982.76 49.575.821 194.37.225 668.97.248 598.28.594 2217013.92 92 BB4_H92 31 2 0.11732.812 51.695.816 199.27.215 675.77.248 601.28.584 2589013.99 93 BB4_H93 31 3 0.06632.798 56.135.866 1947.188 698.67.24 577.78.511 2925013.98 94 BB4_H94 32 1 0.059582.728 54.185.789 208.17.247 642.27.255 622.68.657 1992013.91 95 BB4_H95 32 2 0.073522.784 53.235.758 201.17.221 630.27.249 628.48.66 1934013.93 96 BB4_H96 32 3 0.024742.741 48.635.745 198.57.224 6347.251 624.38.668 1831013.99 97 BB4_H97 33 1 0.094992.696 49.675.805 189.27.204 646.57.25 602.48.625 2019013.93 98 BB4_H98 33 2 0.05052.723 53.325.791 181.37.17 636.47.245 590.78.621 1918013.95 99 BB4_H99 33 3 0.059022.807 55.665.84 186.17.182 662.27.249 571.48.571 2501013.87 100 BB4_H100 34 1 0.055512.75 46.095.756 186.97.202 639.17.242 5988.629 1852013.87 101 BB4_H101 34 2 0.049782.816 49.195.775 180.67.177 635.67.242 589.58.613 1758013.95 102 BB4_H102 34 3 0.0037682.704 52.85.825 188.47.188 646.47.246 588.68.579 2093013.87 103 BB4_H103 35 1 0.047342.806 48.145.761 195.97.223 627.97.244 614.98.635 1607013.84 104 BB4_H104 35 2 0.022912.773 49.95.797 188.57.197 628.27.247 597.68.617 1720013.96 105 BB4_H105 35 3 0.051612.774 53.435.783 1907.189 631.67.242 584.98.598 1880013.85 106 BB4_H106 36 1 0.017522.792 46.215.743 204.77.241 620.37.246 638.78.662 1689013.94 107 BB4_H107 36 2 0.047172.737 51.725.778 197.27.217 6237.249 620.98.639 1708014.02 108 BB4_H108 36 3 0.02832.739 53.815.788 195.97.202 636.97.243 598.28.6 1836013.94 T= Treatment; REP = Replicate; For each cell of statistic, upper row (red) is for MAS 5.0 and lower row (blue) is for RMA estimation.