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Visual Comparison of Hybridizations & Treatments


   Step 1. Select experiments:

        X-axis of Scatterplots:
        
        Y-axis of Scatterplots:
        
            *X- and Y- axes can be from different experiments, which must be of same GeneChip type

   Step 2. Select expression estimation method:

        


   Step 3. Select a Visualization Method:    Help 


1. Scatter Plot & MvA Plot for Treatment Means

     Showing data distribution and expression variability between treatments.
    
     Treatment for x-axis: 
     Treatment for y-axis: 
 
    
 

2. Scatter Plot & MvA Plot for Individual Hybridizations    
     Showing data distribution and expression variability between hybridizations.
    
     Hybridization for x-axis: 
     Hybridization for y-axis: 
 
    
 

3. M vs. A Plots Matrix for Replicates of a Treatment
     Showing the reproducibility among replicate hybridizations

     Select a Treatment:        
 
    
 

4. M vs. A Plots Matrix for Selected Hybridizations
     Showing the variability among selected hybridizations

     Select Up to 6 Hybridizations from Column 1 of Table Below (1 to 4 minutes for 3 to 6 hybridizations):
    
 


     Plot Scale:Log2 Scale(recommended)Original Linear Scale. (RMA estimation values are by default in log2 scale.)


Information of Hybridizations from BB4 

HybridizationTREPFactor:
genotype
Factor:
pathogen isolates
Factor:
time
File_NameSample_ID & Name
1 BB4_H111CI 16137 (Mla1)Bgh 58740 haiJob0301-1aBB4_S1
11526-1
2 BB4_H212CI 16137 (Mla1)Bgh 58740 haiJob0301-37aBB4_S2
11535-1
3 BB4_H313CI 16137 (Mla1)Bgh 58740 hai0304-73BB4_S3
11547-1
4 BB4_H421CI 16137 (Mla1)Bgh 58748 haiJob0301-2BB4_S4
11526-2
5 BB4_H522CI 16137 (Mla1)Bgh 58748 hai0303-38BB4_S5
11535-2
6 BB4_H623CI 16137 (Mla1)Bgh 58748 hai0304-74BB4_S6
11547-2
7 BB4_H731CI 16137 (Mla1)Bgh 587416 haiJob0301-3BB4_S7
11526-3
8 BB4_H832CI 16137 (Mla1)Bgh 587416 hai0303-39BB4_S8
11535-3
9 BB4_H933CI 16137 (Mla1)Bgh 587416 hai0304-75BB4_S9
11547-3
10 BB4_H1041CI 16137 (Mla1)Bgh 587420 haiJob0301-4BB4_S10
11526-4
11 BB4_H1142CI 16137 (Mla1)Bgh 587420 hai0303-40BB4_S11
11535-4
12 BB4_H1243CI 16137 (Mla1)Bgh 587420 hai0304-76BB4_S12
11547-4
13 BB4_H1351CI 16137 (Mla1)Bgh 587424 haiJob0301-5BB4_S13
11526-5
14 BB4_H1452CI 16137 (Mla1)Bgh 587424 hai0303-41BB4_S14
11535-5
15 BB4_H1553CI 16137 (Mla1)Bgh 587424 hai0304-77BB4_S15
11547-5
16 BB4_H1661CI 16137 (Mla1)Bgh 587432 haiJob0301-6BB4_S16
11526-6
17 BB4_H1762CI 16137 (Mla1)Bgh 587432 hai0303-42BB4_S17
11535-6
18 BB4_H1863CI 16137 (Mla1)Bgh 587432 hai0304-78BB4_S18
11547-6
19 BB4_H1971CI 16137 (Mla1)Bgh K10 haiJob0301-19BB4_S19
11528-7
20 BB4_H2072CI 16137 (Mla1)Bgh K10 hai0303-55BB4_S20
11543-7
21 BB4_H2173CI 16137 (Mla1)Bgh K10 hai0307-1BB4_S21
11549-7
22 BB4_H2281CI 16137 (Mla1)Bgh K18 haiJob0301-20BB4_S22
11528-8
23 BB4_H2382CI 16137 (Mla1)Bgh K18 hai0303-56BB4_S23
11543-8
24 BB4_H2483CI 16137 (Mla1)Bgh K18 hai0307-2BB4_S24
11549-8
25 BB4_H2591CI 16137 (Mla1)Bgh K116 haiJob0301-21BB4_S25
11528-9
26 BB4_H2692CI 16137 (Mla1)Bgh K116 hai0303-57BB4_S26
11543-9
27 BB4_H2793CI 16137 (Mla1)Bgh K116 hai0307-3BB4_S27
11549-9
28 BB4_H28101CI 16137 (Mla1)Bgh K120 haiJob0301-22BB4_S28
11528-10
29 BB4_H29102CI 16137 (Mla1)Bgh K120 hai0303-58BB4_S29
11543-10
30 BB4_H30103CI 16137 (Mla1)Bgh K120 hai0307-4BB4_S30
11549-10
31 BB4_H31111CI 16137 (Mla1)Bgh K124 haiJob0301-23BB4_S31
11528-11
32 BB4_H32112CI 16137 (Mla1)Bgh K124 hai0303-59BB4_S32
11543-11
33 BB4_H33113CI 16137 (Mla1)Bgh K124 hai0307-5BB4_S33
11549-11
34 BB4_H34121CI 16137 (Mla1)Bgh K132 haiJob0301-24BB4_S34
11528-12
35 BB4_H35122CI 16137 (Mla1)Bgh K132 hai0303-60BB4_S35
11543-12
36 BB4_H36123CI 16137 (Mla1)Bgh K132 hai0307-6BB4_S36
11549-12
37 BB4_H37131CI 16151 (Mla6)Bgh 58740 haiJob0301-7BB4_S37
11526-7
38 BB4_H38132CI 16151 (Mla6)Bgh 58740 hai0303-43BB4_S38
11535-7
39 BB4_H39133CI 16151 (Mla6)Bgh 58740 hai0304-79BB4_S39
11547-7
40 BB4_H40141CI 16151 (Mla6)Bgh 58748 haiJob0301-8BB4_S40
11526-8
41 BB4_H41142CI 16151 (Mla6)Bgh 58748 hai0303-44BB4_S41
11535-8
42 BB4_H42143CI 16151 (Mla6)Bgh 58748 hai0304-80BB4_S42
11547-8
43 BB4_H43151CI 16151 (Mla6)Bgh 587416 haiJob0301-9BB4_S43
11526-9
44 BB4_H44152CI 16151 (Mla6)Bgh 587416 hai0303-45BB4_S44
11535-9
45 BB4_H45153CI 16151 (Mla6)Bgh 587416 hai0304-81BB4_S45
11547-9
46 BB4_H46161CI 16151 (Mla6)Bgh 587420 haiJob0301-10BB4_S46
11526-10
47 BB4_H47162CI 16151 (Mla6)Bgh 587420 hai0303-46BB4_S47
11535-10
48 BB4_H48163CI 16151 (Mla6)Bgh 587420 hai0304-82BB4_S48
11547-10
49 BB4_H49171CI 16151 (Mla6)Bgh 587424 haiJob0301-11BB4_S49
11526-11
50 BB4_H50172CI 16151 (Mla6)Bgh 587424 hai0303-47BB4_S50
11535-11
51 BB4_H51173CI 16151 (Mla6)Bgh 587424 hai0304-83BB4_S51
11547-11
52 BB4_H52181CI 16151 (Mla6)Bgh 587432 haiJob0301-12BB4_S52
11526-12
53 BB4_H53182CI 16151 (Mla6)Bgh 587432 hai0303-48BB4_S53
11535-12
54 BB4_H54183CI 16151 (Mla6)Bgh 587432 hai0304-84BB4_S54
11547-12
55 BB4_H55191CI 16151 (Mla6)Bgh K10 haiJob0301-25BB4_S55
11529-1
56 BB4_H56192CI 16151 (Mla6)Bgh K10 hai0303-61BB4_S56
11546-1
57 BB4_H57193CI 16151 (Mla6)Bgh K10 hai0304-97BB4_S57
11550-1
58 BB4_H58201CI 16151 (Mla6)Bgh K18 haiJob0301-26BB4_S58
11529-2
59 BB4_H59202CI 16151 (Mla6)Bgh K18 hai0303-62BB4_S59
11546-2
60 BB4_H60203CI 16151 (Mla6)Bgh K18 hai0304-98BB4_S60
11550-2
61 BB4_H61211CI 16151 (Mla6)Bgh K116 haiJob0301-27BB4_S61
11529-3
62 BB4_H62212CI 16151 (Mla6)Bgh K116 hai0303-63BB4_S62
11546-3
63 BB4_H63213CI 16151 (Mla6)Bgh K116 hai0304-99BB4_S63
11550-3
64 BB4_H64221CI 16151 (Mla6)Bgh K120 haiJob0301-28BB4_S64
11529-4
65 BB4_H65222CI 16151 (Mla6)Bgh K120 hai0303-64BB4_S65
11546-4
66 BB4_H66223CI 16151 (Mla6)Bgh K120 hai0304-100BB4_S66
11550-4
67 BB4_H67231CI 16151 (Mla6)Bgh K124 haiJob0301-29BB4_S67
11529-5
68 BB4_H68232CI 16151 (Mla6)Bgh K124 hai0303-65BB4_S68
11546-5
69 BB4_H69233CI 16151 (Mla6)Bgh K124 hai0304-101BB4_S69
11550-5
70 BB4_H70241CI 16151 (Mla6)Bgh K132 haiJob0301-30BB4_S70
11529-6
71 BB4_H71242CI 16151 (Mla6)Bgh K132 hai0303-66BB4_S71
11546-6
72 BB4_H72243CI 16151 (Mla6)Bgh K132 hai0304-102BB4_S72
11550-6
73 BB4_H73251CI 16155 (Mla13)Bgh 58740 haiJob0301-13BB4_S73
11528-1
74 BB4_H74252CI 16155 (Mla13)Bgh 58740 hai0303-49BB4_S74
11543-1
75 BB4_H75253CI 16155 (Mla13)Bgh 58740 hai0304-85BB4_S75
11549-1
76 BB4_H76261CI 16155 (Mla13)Bgh 58748 haiJob0301-14BB4_S76
11528-2
77 BB4_H77262CI 16155 (Mla13)Bgh 58748 hai0303-50BB4_S77
11543-2
78 BB4_H78263CI 16155 (Mla13)Bgh 58748 hai0304-86BB4_S78
11549-2
79 BB4_H79271CI 16155 (Mla13)Bgh 587416 haiJob0301-15BB4_S79
11528-3
80 BB4_H80272CI 16155 (Mla13)Bgh 587416 hai0303-51BB4_S80
11543-3
81 BB4_H81273CI 16155 (Mla13)Bgh 587416 hai0304-87BB4_S81
11549-3
82 BB4_H82281CI 16155 (Mla13)Bgh 587420 haiJob0301-16BB4_S82
11528-4
83 BB4_H83282CI 16155 (Mla13)Bgh 587420 hai0303-52BB4_S83
11543-4
84 BB4_H84283CI 16155 (Mla13)Bgh 587420 hai0304-88BB4_S84
11549-4
85 BB4_H85291CI 16155 (Mla13)Bgh 587424 haiJob0301-17BB4_S85
11528-5
86 BB4_H86292CI 16155 (Mla13)Bgh 587424 hai0303-53BB4_S86
11543-5
87 BB4_H87293CI 16155 (Mla13)Bgh 587424 hai0304-89BB4_S87
11549-5
88 BB4_H88301CI 16155 (Mla13)Bgh 587432 haiJob0301-18-2-2BB4_S88
11528-6
89 BB4_H89302CI 16155 (Mla13)Bgh 587432 hai0303-54BB4_S89
11543-6
90 BB4_H90303CI 16155 (Mla13)Bgh 587432 hai0304-90BB4_S90
11549-6
91 BB4_H91311CI 16155 (Mla13)Bgh K10 haiJob0301-31BB4_S91
11529-7
92 BB4_H92312CI 16155 (Mla13)Bgh K10 hai0303-67BB4_S92
11546-7
93 BB4_H93313CI 16155 (Mla13)Bgh K10 hai0304-103BB4_S93
11550-7
94 BB4_H94321CI 16155 (Mla13)Bgh K18 haiJob0301-32BB4_S94
11529-8
95 BB4_H95322CI 16155 (Mla13)Bgh K18 hai0303-68BB4_S95
11546-8
96 BB4_H96323CI 16155 (Mla13)Bgh K18 hai0304-104BB4_S96
11550-8
97 BB4_H97331CI 16155 (Mla13)Bgh K116 haiJob0301-33BB4_S97
11529-9
98 BB4_H98332CI 16155 (Mla13)Bgh K116 hai0303-69BB4_S98
11546-9
99 BB4_H99333CI 16155 (Mla13)Bgh K116 hai0304-105BB4_S99
11550-9
100 BB4_H100341CI 16155 (Mla13)Bgh K120 haiJob0301-34BB4_S100
11529-10
101 BB4_H101342CI 16155 (Mla13)Bgh K120 hai0303-70BB4_S101
11546-10
102 BB4_H102343CI 16155 (Mla13)Bgh K120 hai0304-106BB4_S102
11550-10
103 BB4_H103351CI 16155 (Mla13)Bgh K124 haiJob0301-35BB4_S103
11529-11
104 BB4_H104352CI 16155 (Mla13)Bgh K124 hai0303-71BB4_S104
11546-11
105 BB4_H105353CI 16155 (Mla13)Bgh K124 hai0304-107BB4_S105
11550-11
106 BB4_H106361CI 16155 (Mla13)Bgh K132 haiJob0301-36BB4_S106
11529-12
107 BB4_H107362CI 16155 (Mla13)Bgh K132 hai0303-72BB4_S107
11546-12
108 BB4_H108363CI 16155 (Mla13)Bgh K132 hai0304-108BB4_S108
11550-12
T= Treatment; REP = Replicate
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