Experiment Visualization: Boxplots, Histogram and RNA Degeneration Curve: 1. Boxplot of raw Perfect match(PM) probe intensities : The raw PM intensity change in distribution for different hybridizations. 2. Boxplot of RMA expression values (log2-scale) : The distribution of RMA expression values for different hybridizations. 3. Boxplot of Affymetrix MAS5.0 expression (log2-scale) : The distribution of Affymetrix MAS5.0 expression values for different hybridizations. 4. Histogram of raw PM intensities : The raw PM intensity change in distribution for different hybridizations. 5. RNA digestion plot : The raw PM intensity change with regard to probe pairs from 5' to 3'. *Visualize hybridizations by scatter plots and MVA plots Check table below for more details on hybridizations. Click a hybridization link for their
Full Details Information of Hybridizations from BB1 Expression Summary Statistic by Hybridization: Hybridization T REP Min. 1st Qu. Median Mean 3rd Qu. Max 1 BB1_H1 1 1 9.506e-023.627 5.480e+015.220 1.797e+026.308 7.894e+026.631 5.172e+027.709 4.233e+0414.310 2 BB1_H2 1 2 0.0213.585 57.4905.145 181.3006.206 735.6006.575 525.6007.679 35530.00014.300 3 BB1_H3 2 1 1.154e-012.409 2.503e+014.883 8.553e+015.918 3.293e+025.931 2.048e+026.844 3.661e+0414.190 4 BB1_H4 2 2 1.591e-012.404 2.057e+014.867 6.919e+015.900 2.760e+025.933 1.640e+026.843 3.678e+0414.170 5 BB1_H5 3 1 6.226e-022.342 1.874e+014.680 6.161e+015.681 1.388e+025.608 1.348e+026.498 2.577e+0413.440 6 BB1_H6 3 2 0.1842.411 14.6804.680 48.8905.682 129.8005.607 113.5006.498 26680.00013.390 7 BB1_H7 4 1 8.607e-022.754 1.801e+014.750 5.697e+015.755 1.253e+025.717 1.336e+026.620 3.414e+0413.460 8 BB1_H8 4 2 1.332e-012.730 1.643e+014.719 4.995e+015.734 1.154e+025.699 1.166e+026.603 3.246e+0413.370 9 BB1_H9 5 1 0.1173.885 21.0805.415 68.4406.052 148.6006.107 161.7006.690 35460.00013.660 10 BB1_H10 5 2 1.425e-013.826 3.357e+015.336 7.442e+015.954 1.470e+026.020 1.624e+026.577 2.654e+0413.830 11 BB1_H11 6 1 2.038e-012.303 1.714e+014.319 5.437e+015.282 1.113e+025.254 1.210e+026.141 3.276e+0413.400 12 BB1_H12 6 2 6.724e-022.259 1.102e+014.313 3.453e+015.276 8.488e+015.251 7.812e+016.142 3.102e+0413.830 T= Treatment; REP = Replicate; For each cell of statistic, upper row (red) is for MAS 5.0 and lower row (blue) is for RMA estimation.