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Sample Information
Step 1. Select an Experiment:
Please choose Species/Platform/Experiment
1. TA1: Wheat--Rehybridization of Wheat and Barley cRNAs to the Affymetrix Wheat Genome Ar...
2. TA2: Wheat--Wheat GeneChip Test
3. OS1: Rice--Rice 57K Affymetrix GeneChip Test
4. FG1: Fusarium--Fusarium transcript detection on Morex barley spikes using Fusarium Affy Ge...
5. FG2: Fusarium--Expression Profiles in Carbon and Nitrogen Starvation Conditions
6. FG4: Fusarium--Fusarium/Barley RNA dilution
7. ZM1: CornChip0--Maize Pilot GeneChip Array
8. BB1: Barley1--Cross-species Detection in Barley1 GeneChip Array
9. BB3: Barley1--Transcription patterns during barley development
10. BB4: Barley1--Mla-specified Transcriptional Responses in Barley-Powdery Mildew Interactio...
11. BB5: Barley1--A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule de...
12. BB7: Barley1--mlo5-mediated resistance responses in barley
13. BB8: Barley1--Microarray of barley genes in wheat-barley chromosome addition lines
14. BB9: Barley1--Barley cv Morex inoculated with Fusarium graminearum and water as mock cont...
15. AT4: ATH1--Arabidopsis thaliana gene expression during floral transition and early fl...
16. AT5: ATH1--Arabidopsis gene expression atlas across developmental time
17. AT6: ATH1--Loss of a callose synthase results in salicylic acid-dependent disease resi...
18. AT8: ATH1--Expression analysis of Arabidopsis suspension cells during sucrose starvati...
19. AT10: ATH1--Arabidopsis thaliana gene expression after 6 days in shoot induction medium
20. AT11: ATH1--Transcriptome analysis of glyoxylate cycle knock-out mutants in early stage...
21. AT12: ATH1--Gene expression and carbohydrate metabolism through the diurnal cycle
22. AT13: ATH1--Impact of Type III effectors on plant defense responses
23. AT14: ATH1--Genes affected by hog1 alleviation of CHS silencing
24. AT15: ATH1--Analysis of anther development by analysing downstream genes controlled by ...
25. AT16: ATH1--Carbohydrate- and redox-regulation of gene expression in a TPT mutant
26. AT17: ATH1--Indole acetic acid treatment-dose response and time course
27. AT18: ATH1--The mechanisms involved in the interplay between dormancy and secondary gro...
28. AT19: ATH1--The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress respon...
29. AT20: ATH1--The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress respon...
30. AT23: ATH1--AtGenExpress: Pseudomonas half leaf injection
31. AT26: ATH1--3-week old Arabidopsis Col-0 and pmr4 plants were infected with Erysiphe ci...
32. AT27: ATH1--Erysiphe orontii infection, 7 dpi
33. AT28: ATH1--Erysiphe orontii infection, 5 dpi
34. AT29: ATH1--Comparison of Col wild-type and mutant sid2-2 (eds16) responses to Erysiphe...
35. AT30: ATH1--Response to Erysiphe orontii infection, time course experiment
36. AT7: AG--The Transcriptional Innate Immune Response to flg22-Interplay and Overlap w...
37. FG3: --Cross-species hybridization
Step 2. Select a Sample:
1. 1. BB1_S1, T=1, R=1, species=Barley
2. 2. BB1_S2, T=1, R=2, species=Barley
3. 3. BB1_S3, T=2, R=1, species=Wheat
4. 4. BB1_S4, T=2, R=2, species=Wheat
5. 5. BB1_S5, T=3, R=1, species=Oat
6. 6. BB1_S6, T=3, R=2, species=Oat
7. 7. BB1_S7, T=4, R=1, species=Sorghum
8. 8. BB1_S8, T=4, R=2, species=Sorghum
9. 9. BB1_S9, T=5, R=1, species=Corn
10. 10. BB1_S10, T=5, R=2, species=Corn
11. 11. BB1_S11, T=6, R=1, species=Rice
12. 12. BB1_S12, T=6, R=2, species=Rice
T: Treatment; R: Replicate
*
Sample name:
Expt # 11771-1
*
Organism:
Oryza sativa
Sample type:
leaf
Development stage:
* 02-seedling growth (GRO:0007058)
* 2.02-first leaf unfolded (GRO:0007060)
Organism part:
plant anatomy ontology (PO:0009011)
whole plant (PO:0009011) (PO:0009011)
* leaf (GRO:0005306)
* first leaf (GRO:0005118)
Age:
single
range
Min:7
Max:7
Unit:days
Initial time point:
Genetic variation:
wild type
Individual indentifier:
Individual genetic trait genotype:
Lemont (Rice)
Separation technique:
trimming
Sampling date (MM/DD/YYYY):
06/2/2003
Sample preparation date (MM/DD/YYYY):
06/13/2003
Hybridization date (MM/DD/YYYY):
6/24/2003
Cell type or target cell type:
Treatment application type:
Sample treatment protocol:
In vitro or in vivo treatment:
----------------------------------------
Growth Condition ------------------------------------------
Growth time:
single
range
Min:7
Max:7
Unit:days
Growth temperature in oC:
single
range
Min:25
Max:30
Growth media:
Description:
Seedlings were grown in the greenhouse for 7 days.
----------------------------------------
Sample provider information ------------------------------------------
Same as experiment submitter
Different from experiment submitter
Name:
Rico Caldo
E-mail:
racaldo@iastate.edu
Institution:
Iowa State University
Head of lab:
Roger P Wise
Telephone:
515-294-2893
URL
www.wiselab.org
----------------------------------------
Protocol binding ------------------------------------------
*
Extract protocol:
Hot Phenol/Guanidine Thiocyanate and RNeasy Clean up
*
Labeling protocol:
Affy-Eukaryotic Target Preparation
*
Hybridization protocol:
Affy- Eukaryotic Target Hybridization
*
Scanning protocol:
Affy- Array Scanning
*
Washing and staining procedure:
Affy- Eukaryotic Array Washing and Staining
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