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Statistical Test Filter for Microarray Elements


Step 1. Select experiment and estimation

Experiment: 

Please choose Species/Platform/Experiment
Estimation: 
 
Step 2. Set expression data filtering parameters   Help
1. Two Group Test Filter: 

Test Type:  
 
2. Multi-Group Test Filter: 

Test Type:  

Group Specification:   
ANOVA needs >= 2 groups, >= 2 replicates per group. Please define groups below. Also notice that normality and variance assumptions for ANOVA may not hold for microarray data.
Warning: These filters may take up to 5 minutes
 
3.   General Stat. Test Options: 

Multiple Test Correction:

Criteria for Declaring DE: FWER <=   in   and FDR <=   in

P-Value Adjust take places on raw p-values from tests.

Data Transformation: Original Scale Log2 Scale(RMA estimation values are stored in log2 scale).

   More filters on expression profiles.

HybridizationTREPFile NameFactor:
genotype		Factor:
time		Two-Sample Test GroupANOVA Group

Notice: (1). Setup groups for 2-sample and multi-sample tests. (2). N = Not in any group; (3). ANOVA group must be consecutive numbers starting from 1. (4). T= Treatment, REP = Replicate.

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