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MPT - Microarray Platform Translator
Microarray Platform Translation Type :
1. Translate Microarray Element Identifiers Between Microarray Platforms
2. Translate GenBank Sequences to Microarray Elements
3. Translate Microarray Element Identifiers to Same Species GenBank Sequence Identifiers
You can import list of probe sets or exemplars names in "Source Platform", and get their putative orthologous microarray elements from "Target Platform" based on pre-computed TBLASTX results.
Source Platform:
1. Barley1 22K GeneChip
2. Arabidopsis ATH1 22K GeneChip
3. Grape Vitis_Vinifera 16K GeneChip
4. Maize CornChip0 8K GeneChip
5. Maize 18K GeneChip
6. Maize 58K Spotted Oligo Array
7. Rice 57K GeneChip
8. Soybean 61K GeneChip
9. Sugarcane 8K GeneChip
10. Wheat 61K GeneChip
Target Platform:
1. Barley1 22K GeneChip*
2. Arabidopsis ATH1 22K GeneChip*
3. Grape Vitis_Vinifera 16K GeneChip
4. Maize CornChip0 8K GeneChip*
5. Maize 18K GeneChip*
6. Maize 58K Spotted Oligo Array
7. Rice 57K GeneChip
8. Soybean 61K GeneChip
9. Sugarcane 8K GeneChip
10. Wheat 61K GeneChip
Provide input for source platform microarray elements:
*Sample input from
Barley1
and
Maize 18K
GeneChip
BLAST Type:
Standard nucleotide-nucleotide BLAST [blastn]
Nucleotide query - Translated database[tblastx]
Expect:
Matrix:
BLOSUM62
BLOSUM45
BLOSUM80
PAM30
PAM70
Max.No. Hits:
best BLAST matches (<=5) to keep for each input sequence.
Prefered input is a list of microarray element or sequence identifiers, separated by comma, tab, or white space. Free text containing identifiers may also serve as input, where the the input will be automatically purged. But this input type may not always work accurately.
Microarray Platform Translator has been run 4954 times since April 1, 2005
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BarleyBase Group
All rights reserved.
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