Hello! Guest! Please Login or Register! Log Out

Arabidopsis KEGG Pathway-Based Probe Set Query


There are 3,843 enzyme entries in the KEGG Arabidopsis pathways, which represent 1,859 genomics loci, and 1,677 ATH1-121501 GeneChip probe sets. To search for probe sets in a given pathway, first select a pathway from the list below, then in the resulting page, search for probe sets corresponding to one or all enzymes in the pathway.



I. KEGG Regulatory Pathways in Arabidopsis thaliana


 Genetic Information Processing

 Transcription

 

RNA polymerase

Ortholog

 

Basal transcription factors

Ortholog

 

RNA biosynthesis

 

 

mRNA - Eukaryotes (Standard)
tRNA - Eukaryotes (Standard)
rRNA - Eukaryotes (Standard)

Ribosomal protein gene clusters

 Translation

 

Ribosome

Ortholog

 

Translation factors

Ortholog

 

Aminoacyl-tRNA biosynthesis

Ortholog

 

Protein biosynthesis - Eukaryotes (Standard)

 

 

 

Sorting and Degradation

 

Protein export

Ortholog

 

Type II secretion system

Ortholog

 

Type III secretion system

Ortholog

 

Type IV secretion system

Ortholog

 

Ubiquitin mediated proteolysis

Ortholog

 

Proteasome

Ortholog

Replication and Repair

 

DNA polymerase

Ortholog


 Environmental Information Processing

 Membrane Transport

 

ABC transporters, prokaryotic type

Ortholog

 

ABC transporters, ABC-2 and other types

Ortholog

 

Phosphotransferase system (PTS)

Ortholog

 Signal Transduction

 

Two-component system

Ortholog

 

MAPK signaling pathway

Ortholog

 

Second messenger signaling pathway

 

 

Phosphatidylinositol signaling system

 

 Ligand-Receptor Interaction

 

G protein coupled receptors

Ortholog

 

Ion channel receptors

Ortholog

 

Cytokine receptors

CD molecules, Cytokines


 Cellular Processes

    Cell Motility

    Cell Growth and Death

    Cell Communication

    Development

    Behavior

 

    Circadian rhythm

Ortholog

 


II. KEGG Metabolic Pathways in Arabidopsis thaliana


Metabolism

Carbohydrate Metabolism

 

Glycolysis / Gluconeogenesis

Ortholog, Oxidoreductases

 

Citrate cycle (TCA cycle)

Ortholog

 

Pentose phosphate pathway

Ortholog

 

Pentose and glucuronate interconversions

Ortholog

 

Fructose and mannose metabolism

Ortholog, PTS

 

Galactose metabolism

Ortholog

 

Ascorbate and aldarate metabolism

Ortholog

 

Pyruvate metabolism

Ortholog

 

Glyoxylate and dicarboxylate metabolism

Ortholog

 

Propanoate metabolism

Ortholog

 

Butanoate metabolism

Ortholog

 

C5-Branched dibasic acid metabolism

 

 

Inositol metabolism

Ortholog

Energy Metabolism

 

Oxidative phosphorylation

Ortholog

 

ATP synthesis

Ortholog

 

Photosynthesis

Ortholog

 

Carbon fixation

 

 

Reductive carboxylate cycle (CO2 fixation)

 

 

Methane metabolism

Ortholog

 

Nitrogen metabolism

Ortholog

 

Sulfur metabolism

Ortholog

Lipid Metabolism

 

Fatty acid biosynthesis (path 1)

Ortholog

 

Fatty acid biosynthesis (path 2)

Ortholog

 

Fatty acid metabolism

Ortholog

 

Synthesis and degradation of ketone bodies

 

 

Sterol biosynthesis

Ortholog

 

Bile acid biosynthesis

 

 

C21-Steroid hormone metabolism

 

 

Androgen and estrogen metabolism

 

Nucleotide Metabolism

 

Purine metabolism

Ortholog

 

Pyrimidine metabolism

Ortholog

 

Nucleotide sugars metabolism

Ortholog

Amino Acid Metabolism

 

Glutamate metabolism

Ortholog, Aminotransferases

 

Alanine and aspartate metabolism

Ortholog

 

Glycine, serine and threonine metabolism

Ortholog

 

Methionine metabolism

Ortholog

 

Cysteine metabolism

Ortholog

 

Valine, leucine and isoleucine degradation

Ortholog

 

Valine, leucine and isoleucine biosynthesis

Ortholog

 

Lysine biosynthesis

Ortholog

 

Lysine degradation

 

 

Arginine and proline metabolism

Ortholog

 

Histidine metabolism

Ortholog

 

Tyrosine metabolism

Ortholog

 

Phenylalanine metabolism

Ortholog

 

Tryptophan metabolism

 

 

Phenylalanine, tyrosine and tryptophan biosynthesis

Ortholog

 

Urea cycle and metabolism of amino groups

Ortholog

Metabolism of Other Amino Acids

 

beta-Alanine metabolism

Ortholog

 

Taurine and hypotaurine metabolism

 

 

Aminophosphonate metabolism

 

 

Selenoamino acid metabolism

 

 

Cyanoamino acid metabolism

 

 

D-Glutamine and D-glutamate metabolism

 

 

D-Arginine and D-ornithine metabolism

 

 

D-Alanine metabolism

 

 

Glutathione metabolism

 

Metabolism of Complex Carbohydrates

 

Starch and sucrose metabolism

Ortholog, PTS

 

N-Glycans biosynthesis

 

 

O-Glycans biosynthesis

 

 

N-Glycan degradation

 

 

Aminosugars metabolism

Ortholog, PTS

 

Lipopolysaccharide biosynthesis

Ortholog

 

Peptidoglycan biosynthesis

Ortholog

 

Glycosaminoglycan degradation

 

 

Chondroitin / heparan sulfate biosynthesis

Proteoglycans

 

Keratan sulfate biosynthesis

 

Metabolism of Complex Lipids

 

Glycerolipid metabolism

Ortholog

 

Glycosylphosphatidylinositol(GPI)-anchor biosynthesis

 

 

Inositol phosphate metabolism

 

 

Sphingophospholipid biosynthesis

 

 

Phospholipid degradation

 

 

Sphingoglycolipid metabolism

 

 

Blood group glycolipid biosynthesis - lact series

 

 

Blood group glycolipid biosynthesis - neolact series

 

 

Globoside metabolism

 

 

Ganglioside biosynthesis

 

 

Prostaglandin and leukotriene metabolism

 

Metabolism of Cofactors and Vitamins

 

Thiamine metabolism

Ortholog

 

Riboflavin metabolism

Ortholog

 

Vitamin B6 metabolism

 

 

Nicotinate and nicotinamide metabolism

Ortholog

 

Pantothenate and CoA biosynthesis

Ortholog

 

Biotin metabolism

Ortholog

 

Folate biosynthesis

Ortholog

 

One carbon pool by folate

Ortholog

 

Retinol metabolism

 

 

Porphyrin and chlorophyll metabolism

Ortholog

 

Ubiquinone biosynthesis

Ortholog

Biosynthesis of Secondary Metabolites

 

Terpenoid biosynthesis

 

 

Indole and ipecac alkaloid biosynthesis

 

 

Flavonoids, stilbene and lignin biosynthesis

 

 

Alkaloid biosynthesis I

 

 

Alkaloid biosynthesis II

 

 

Penicillins and cephalosporins biosynthesis

 

 

beta-Lactam resistance

 

 

Streptomycin biosynthesis

 

 

Erythromycin biosynthesis

 

 

Tetracycline biosynthesis

 

 

Clavulanic acid biosynthesis

 

 

Puromycin biosynthesis

 

Biodegradation of Xenobiotics

 

Caprolactam degradation

 

 

Biphenyl degradation

 

 

Toluene and xylene degradation

 

 

gamma-Hexachlorocyclohexane degradation

 

 

3-Chloroacrylic acid degradation

 

 

1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation

 

 

2,4-Dichlorobenzoate degradation

 

 

1,2-Dichloroethane degradation

 

Tetrachloroethene degradation

 

Styrene degradation

 

 

1,4-Dichlorobenzene degradation

 

 

Nitrobenzene degradation

 

 

Ethylbenzene degradation

 

 

Fluorene degradation

 

 

Carbazole degradation

 

 

Benzoate degradation via CoA ligation

 

 

Benzoate degradation via hydroxylation

 

 

Atrazine degradation

 

This page use data from KEGG and follows format of KEGG's metabolic pathway and regulatory pathwayindex pages.

 

Copyright@2001-2005 The BarleyBase Group
All rights reserved.

For problems with the webpages, contact barleybasewebmaster