II. Comparing two Gene Lists Select different gene lists to compare: List 1: 1. guest_D14, untitled, from BB1, mas, , 0 genes, 2006-01-30 14:23:51 2. guest_D13, untitled, from BB1, mas, Keyword Filter
, 30 genes, 2006-01-24 22:55:36 3. guest_D12, untitled, from TA1, mas, GO2Expression--Gene Ontology to Gene List Filter
, 0 genes, 2006-01-19 15:48:53 4. guest_D11, untitled, from TA1, mas, Arabidopsis Gene Family Filter
, 0 genes, 2006-01-10 02:50:48 5. guest_D10, untitled, from BB1, mas, Imported gene list
, 2 genes, 2006-01-09 21:59:38 6. guest_D8, , from AT4, rma, Arabidopsis KEGG Pathway Filter
, 60 genes, 2006-01-08 08:54:47 7. guest_D7, untitled, from BB1, mas, ANOVA Filter, 505 genes, 2006-01-08 06:35:20 8. guest_D6, untitled, from BB1, mas, Imported gene list
, 1 genes, 2006-01-06 11:37:03 9. guest_D5, untitled, from BB1, mas, Absolute Value Filter, 695 genes, 2005-12-30 15:58:09 10. guest_D4, untitled, from VV2, mas, Composite Filter, 150 genes, 2005-12-28 09:34:04 11. guest_D3, untitled, from BB1, mas, Imported gene list
, 300 genes, 2005-12-19 16:52:01 12. guest_D2, untitled, from BB1, mas, Absolute Value Filter, 695 genes, 2005-08-18 12:27:45 13. guest_D1, untitled, from BB5, mas, Fold Change Filter, 22 genes, 2005-08-10 23:34:17 List 2: 1. guest_D14, untitled, from BB1, mas, , 0 genes, 2006-01-30 14:23:51 2. guest_D13, untitled, from BB1, mas, Keyword Filter
, 30 genes, 2006-01-24 22:55:36 3. guest_D12, untitled, from TA1, mas, GO2Expression--Gene Ontology to Gene List Filter
, 0 genes, 2006-01-19 15:48:53 4. guest_D11, untitled, from TA1, mas, Arabidopsis Gene Family Filter
, 0 genes, 2006-01-10 02:50:48 5. guest_D10, untitled, from BB1, mas, Imported gene list
, 2 genes, 2006-01-09 21:59:38 6. guest_D8, , from AT4, rma, Arabidopsis KEGG Pathway Filter
, 60 genes, 2006-01-08 08:54:47 7. guest_D7, untitled, from BB1, mas, ANOVA Filter, 505 genes, 2006-01-08 06:35:20 8. guest_D6, untitled, from BB1, mas, Imported gene list
, 1 genes, 2006-01-06 11:37:03 9. guest_D5, untitled, from BB1, mas, Absolute Value Filter, 695 genes, 2005-12-30 15:58:09 10. guest_D4, untitled, from VV2, mas, Composite Filter, 150 genes, 2005-12-28 09:34:04 11. guest_D3, untitled, from BB1, mas, Imported gene list
, 300 genes, 2005-12-19 16:52:01 12. guest_D2, untitled, from BB1, mas, Absolute Value Filter, 695 genes, 2005-08-18 12:27:45 13. guest_D1, untitled, from BB5, mas, Fold Change Filter, 22 genes, 2005-08-10 23:34:17
Summary of Comparison:
a New Gene List Named from selected subset in table. New gene list will be for experiment and estimation selected below: Experiment: Please choose Species/Platform/Experiment 1. TA1: Wheat--Rehybridization of Wheat and Barley cRNAs to the Affymetrix Wheat Genome Ar... 2. TA2: Wheat--Wheat GeneChip Test 3. OS1: Rice--Rice 57K Affymetrix GeneChip Test 4. ZM1: CornChip0--Maize Pilot GeneChip Array 5. BB1: Barley1--Cross-species Detection in Barley1 GeneChip Array 6. BB4: Barley1--Mla-specified Transcriptional Responses in Barley-Powdery Mildew Interactio... 7. BB5: Barley1--A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule de... 8. BB7: Barley1--mlo5-mediated resistance responses in barley 9. BB8: Barley1--Microarray of barley genes in wheat-barley chromosome addition lines 10. AT4: ATH1--Arabidopsis thaliana gene expression during floral transition and early fl... 11. AT5: ATH1--Arabidopsis gene expression atlas across developmental time 12. AT6: ATH1--Loss of a callose synthase results in salicylic acid-dependent disease resi... 13. AT8: ATH1--Expression analysis of Arabidopsis suspension cells during sucrose starvati... 14. AT10: ATH1--Arabidopsis thaliana gene expression after 6 days in shoot induction medium 15. AT11: ATH1--Transcriptome analysis of glyoxylate cycle knock-out mutants in early stage... 16. AT12: ATH1--Gene expression and carbohydrate metabolism through the diurnal cycle 17. AT13: ATH1--Impact of Type III effectors on plant defense responses 18. AT14: ATH1--Genes affected by hog1 alleviation of CHS silencing 19. AT15: ATH1--Analysis of anther development by analysing downstream genes controlled by ... 20. AT16: ATH1--Carbohydrate- and redox-regulation of gene expression in a TPT mutant 21. AT17: ATH1--Indole acetic acid treatment-dose response and time course 22. AT18: ATH1--The mechanisms involved in the interplay between dormancy and secondary gro... 23. AT19: ATH1--The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress respon... 24. AT20: ATH1--The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress respon... 25. AT23: ATH1--AtGenExpress: Pseudomonas half leaf injection 26. AT7: AG--The Transcriptional Innate Immune Response to flg22-Interplay and Overlap w... Estimation: 1. RMA-Robust Multi-Chip Average 2. Affymetrix MAS5.0 Suite Estimation
A gene list is a list of genes or probe sets, along with their expression and annotation. Gene lists are obtained from probse set filtering(query), or from analysis results.
Gene lists can be used for comparing sets of probe sets meeting different criteria. This maybe used for cross experiment comparison, analysis method comparison, or gene filter comparison.
New Gene lists can be generated from existing ones by retrieving the expression values from another experiment, or by retrieving probe sets common, or different between two existing gene lists.