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Gene List Analysis and Management

I. Using Single Gene List

1. Select a Gene List:

     WARNING: Gene list for unregistered users will be deleted in 48 hours. Please register to save your results in BarleyBase.

            

2. Rename Current Gene List to:      

3. Analyze by Hierarchical Clustering, K-Means partition, Sammon's MDS, PCA, or SOM.

4. Visualize by expression profile line graph and heatmap.

5. View probe set details: Annotation  or  Expression.

6. Export probe sets as tab-delimited text file: Names; Annotation; or  Expression.
     You may import the probe set names back to BarleyBase to rebuilt your gene list in future. 

7. Import my own gene list to BarleyBase.

8. Expression2Function: Functionally classification and comparison of gene list(s) by Gene Ontology, Metabolic pathway etc.


9. Current Gene List Details:    
Owner: Guest
Gene List Number & Name: Guest_D10, test
imported
Creation Date: 2006-07-25 11:04:52

II. Comparing two Gene Lists

Select different gene lists to compare:
 
List 1:  
List 2:  

Summary of Comparison:
 
Criteria No.Probe Sets Save to Gene List?
Present in Both Gene Lists (AND)  19
Present in Either Gene Lists (OR)  19
Unique to either List 1 or 2 (XOR)  0
Unique to List 1 (XOR2)  0
Unique to List 2 (XOR3)  0
  
a New Gene List Named  from selected subset in table. New gene list will be for experiment and estimation selected below:
 
Experiment: 

Please choose Species/Platform/Experiment
Estimation: 
 


A gene list is a list of genes or probe sets, along with their expression and annotation. Gene lists are obtained from probse set filtering(query), or from analysis results.

Gene lists can be used for comparing sets of probe sets meeting different criteria. This maybe used for cross experiment comparison, analysis method comparison, or gene filter comparison. New Gene lists can be generated from existing ones by retrieving the expression values from another experiment, or by retrieving probe sets common, or different between two existing gene lists.

 
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