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Arabidopsis Gene Family


Information on Arabidopsis Gene Families was  compiled and made public by TAIR at gene family page. The original information comes from researchers specializing in different gene families. Please go to TAIR website for a complete list of researchers who contributed the data.

Current status of the gene families:

  Number of super families: 45.
  Number of distinct sub-families without super family: 176.
  Number of all types distinct sub-families, either with or without super family: 796.
  Number of genes: 5,477.
  Total number of ATH1-121501 GeneChip probe sets with loci listed in the gene families: 4,175.

To retrieve gene and expression information for  a gene family, first select a gene family
then click "Expression" to view expression profile for member genes. Or click "Genes" for details about the gene family.


   Current Experiment:
        

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   Current expression estimation method:

        

I. Gene Super Families


1. ABC Superfamily 13 sub-familes, 129 members Genes Expression
2. ABC transporters 4 sub-familes, 94 members Genes Expression
3. Acyl Lipid Metabolism Family 198 sub-familes, 610 members Genes Expression
4. AGC Family 7 sub-familes, 39 members Genes Expression
5. Antiporters 12 sub-familes, 70 members Genes Expression
6. Aquaporin Families 2 sub-familes, 35 members Genes Expression
7. Brevin Group 1 sub-familes, 2 members Genes Expression
8. Carbohydrate Esterase Gene Families 5 sub-familes, 98 members Genes Expression
9. Chloroplast and Mitochondria gene families 16 sub-familes, 50 members Genes Expression
10. Cytochrome b5 2 sub-familes, 7 members Genes Expression
11. Cytochrome P450 69 sub-familes, 256 members Genes Expression
12. Cytoskeleton 2 sub-familes, 15 members Genes Expression
13. Expansins 4 sub-familes, 35 members Genes Expression
14. F-Box Proteins 1 sub-familes, 4 members Genes Expression
15. Glycoside Hydrolase Gene Families 29 sub-familes, 386 members Genes Expression
16. Glycosyltransferase Gene Families 28 sub-familes, 360 members Genes Expression
17. Heat Shock Transcription Factors 1 sub-familes, 21 members Genes Expression
18. Inorganic Solute Cotransporters 14 sub-familes, 84 members Genes Expression
19. Ion Channel Families 7 sub-familes, 61 members Genes Expression
20. Kinesins 1 sub-familes, 61 members Genes Expression
21. Lipid Metabolism Gene Families 28 sub-familes, 98 members Genes Expression
22. Longin Group 4 sub-familes, 15 members Genes Expression
23. MAPKKK 3 sub-familes, 80 members Genes Expression
24. Monolignol Biosynthesis 16 sub-familes, 61 members Genes Expression
25. MYB 1 sub-familes, 132 members Genes Expression
26. Myosin 1 sub-familes, 17 members Genes Expression
27. NADPH P450 reductases 1 sub-familes, 3 members Genes Expression
28. NSF and SNAP Proteins 3 sub-familes, 4 members Genes Expression
29. Organic Solute Cotransporters 35 sub-familes, 279 members Genes Expression
30. Other SNAREs 4 sub-familes, 10 members Genes Expression
31. Phospholipase D 2 sub-familes, 12 members Genes Expression
32. Plant Cell Wall Biosynthesis Families 8 sub-familes, 52 members Genes Expression
33. Plant defensins superfamily 3 sub-familes, 15 members Genes Expression
34. Pollen Coat Proteome 4 sub-familes, 11 members Genes Expression
35. Polysaccharide Lyase Gene Families 2 sub-familes, 35 members Genes Expression
36. Primary Pumps (ATPases) Gene Families 12 sub-familes, 83 members Genes Expression
37. Protein synthesis factors 43 sub-familes, 100 members Genes Expression
38. Protein synthesis factors in ArabidopsisExpansins 1 sub-familes, 1 members Genes Expression
39. Response Regulator 3 sub-familes, 32 members Genes Expression
40. SEC1 Proteins 4 sub-familes, 6 members Genes Expression
41. SNAP25-like group 1 sub-familes, 3 members Genes Expression
42. Sulfurtransferasese / Rhodanese Family 6 sub-familes, 18 members Genes Expression
43. Syntaxin 10 sub-familes, 25 members Genes Expression
44. Trehalose Biosynthesis Gene Families 3 sub-familes, 11 members Genes Expression
45. WRKY Transcription Factor Superfamily 7 sub-familes, 73 members Genes Expression



II. Gene Sub-Families Without Super-Family
1. 14-3-3 proteins 13 members Genes Expression
2. 14-3-3s 1 members Genes Expression
3. 3-hydroxyisobutyryl-coenzyme A hydrolase family 3 members Genes Expression
4. 4-coumarate--CoA ligase - like family 9 members Genes Expression
5. 60S ribosomal L19 proteins 3 members Genes Expression
6. AAA-type ATPases 3 members Genes Expression
7. AAAP family 43 members Genes Expression
8. ACA 13 members Genes Expression
9. ACBP60s 7 members Genes Expression
10. Actin family 2 members Genes Expression
11. Adenine phosphoribosyltransferase 1 APRT family 3 members Genes Expression
12. Aldose 1-epimerase - like family 2 members Genes Expression
13. Alpha/beta hydrolase family 2 members Genes Expression
14. Alpha/beta hydrolase fold family 3 members Genes Expression
15. Alternative oxidase family 5 members Genes Expression
16. Aminoalcoholphosphotransferase family 2 members Genes Expression
17. AMP-binding protein, putative family 2 members Genes Expression
18. Ankyrin-like protein family 12 members Genes Expression
19. Ankyrin-repeat-containing protein-like family 6 members Genes Expression
20. Arabidopsis ARIADNE gene family: subfamily A 4 members Genes Expression
21. Arabidopsis ARIADNE gene family: subfamily B 8 members Genes Expression
22. Arabidopsis ARIADNE gene family: subfamily C 4 members Genes Expression
23. Arabidopsis COBRA subfamily1 7 members Genes Expression
24. Arabidopsis COBRA subfamily2 5 members Genes Expression
25. AS2 family 42 members Genes Expression
26. AtCBLs (Calcineurin B-like Calcium Sensor Proteins) 10 members Genes Expression
27. AtCIPKs 25 members Genes Expression
28. AtMRS2 11 members Genes Expression
29. AtRER1C family 4 members Genes Expression
30. axi 1-like family 7 members Genes Expression
31. Barley Mlo protein isolog 1 members Genes Expression
32. Bax inhibitor-1 / TEGT protein homolog family 14 members Genes Expression
33. Beta-1,3-glucanase family 6 members Genes Expression
34. Beta-hydroxyacyl-ACP dehydratase family 2 members Genes Expression
35. Blue copper binding protein family 22 members Genes Expression
36. Calcium Dependent Protein Kinase 34 members Genes Expression
37. Caleosins 1 members Genes Expression
38. Calmodulin-binding heat-shock - like family 3 members Genes Expression
39. Calnexin homolog family 2 members Genes Expression
40. Carnitine racemase like family 2 members Genes Expression
41. CB-HSPs 3 members Genes Expression
42. CDPKs 34 members Genes Expression
43. Cell division protein FtsH isolog family 2 members Genes Expression
44. Cell division protein FtsH-like protein family 5 members Genes Expression
45. Cinnamyl alcohol dehydrogenase family 3 members Genes Expression
46. Class III peroxidase 73 members Genes Expression
47. CNGCs 20 members Genes Expression
48. Contains similarity to mouse and human SL15 proteins family 2 members Genes Expression
49. Core Cell Cycle Genes 61 members Genes Expression
50. CRKs 3 members Genes Expression
51. Cysteine synthase AtcysC1 family 3 members Genes Expression
52. Disease resistance protein family 3 members Genes Expression
53. Downy mildew resistance-like protein family 8 members Genes Expression
54. EF-1alpha 4 members Genes Expression
55. EF-hand containing proteins:Group I 23 members Genes Expression
56. EF-hand containing proteins:Group II 47 members Genes Expression
57. EF-hand containing proteins:Group III 40 members Genes Expression
58. EF-hand containing proteins:Group IV 54 members Genes Expression
59. EF-hand containing proteins:Group V 3 members Genes Expression
60. EF-hand containing proteins:Group VI 30 members Genes Expression
61. EICBPs 6 members Genes Expression
62. EIN2 1 members Genes Expression
63. Ethylene-regulated nuclear protein ERT2-like family 2 members Genes Expression
64. Family of Arabidopsis genes related to Xyloglucan Fucosyltransferase1 13 members Genes Expression
65. FRO1-like protein; NADPH oxidase-like family 8 members Genes Expression
66. Fructose-bisphosphate aldolase family 2 members Genes Expression
67. GAD 5 members Genes Expression
68. Gamma-glutamyltransferase-like family 3 members Genes Expression
69. Germin-like protein family 5 members Genes Expression
70. Globulin-like protein family 2 members Genes Expression
71. Glucosyltransferase like protein family 2 members Genes Expression
72. Glycine-rich protein family 4 members Genes Expression
73. Glycine/proline-rich protein 1 members Genes Expression
74. Histidine Kinase 16 members Genes Expression
75. Histidine Phosphotransfer Proteins 6 members Genes Expression
76. Homology to DNAJ heatshock protein family 3 members Genes Expression
77. HSP70s 6 members Genes Expression
78. Hypothetical proteins 4 members Genes Expression
79. Katanin p80 subunit - like 1 members Genes Expression
80. Lateral Organ Boundaries Gene Family- Class I 37 members Genes Expression
81. Lateral Organ Boundaries Gene Family- Class II 6 members Genes Expression
82. Leucine rich repeat receptor kinase-like protein 1 members Genes Expression
83. Luminal binding protein family 2 members Genes Expression
84. MADS like gene family 16 members Genes Expression
85. Magnesium Transporters 11 members Genes Expression
86. Mandelonitrile lyase-like protein family 3 members Genes Expression
87. MAP Kinase 20 members Genes Expression
88. MAP Kinase Kinase 10 members Genes Expression
89. MAPKKKK 10 members Genes Expression
90. MIP family 38 members Genes Expression
91. Mitochondrial Protein Translocase (MPT) Family 6 members Genes Expression
92. MLO proteins 14 members Genes Expression
93. Monooxygenase family 2 members Genes Expression
94. MTN3-like protein family 16 members Genes Expression
95. Myosin-like 1 members Genes Expression
96. Nodulin-like protein family 64 members Genes Expression
97. Not56-like protei 1 members Genes Expression
98. Nucellin, putative family 2 members Genes Expression
99. Nuclear envelope membrane protein-like family 2 members Genes Expression
100. Nucleotide sugar epimerase -like family 4 members Genes Expression
101. Oligosaccharyl transferase STT3-like family 2 members Genes Expression
102. Patatin-like protein family 2 members Genes Expression
103. PCBPs 3 members Genes Expression
104. Peroxisomal membrane protein 1 members Genes Expression
105. Peroxisomal membrane protein family 2 members Genes Expression
106. Phospholipase D 12 members Genes Expression
107. Pirin-like proteins 4 members Genes Expression
108. Plant U-box protein (PUB) Class I 1 members Genes Expression
109. Plant U-box protein (PUB) Class II 30 members Genes Expression
110. Plant U-box protein (PUB) Class III 12 members Genes Expression
111. Plant U-box protein (PUB) Class IV 8 members Genes Expression
112. Plant U-box protein (PUB) Class V 7 members Genes Expression
113. Plant U-box protein (PUB) Class VI 2 members Genes Expression
114. Plant U-box protein (PUB) Class VII 1 members Genes Expression
115. PPI 2 members Genes Expression
116. Purple acid phosphatase family 2 members Genes Expression
117. Putative acyl-CoA:1-acylglycerol-3-phosphate acyltransferase family 4 members Genes Expression
118. Putative endosomal protein family 12 members Genes Expression
119. Putative ER lumen protein retaining receptor family 7 members Genes Expression
120. Putative ethylene receptor; ERS2 family 5 members Genes Expression
121. Putative expansin family 3 members Genes Expression
122. Putative glucosyltransferase family 13 members Genes Expression
123. Putative glutamate-/aspartate-binding peptide family 4 members Genes Expression
124. Putative glutaredoxin family 5 members Genes Expression
125. Putative glutathione transferase family 2 members Genes Expression
126. Putative glycosylasparaginase 1 members Genes Expression
127. Putative kinesin heavy chain family 3 members Genes Expression
128. Putative LEA (late embryogenesis abundant) protein 1 members Genes Expression
129. Putative obtusifoliol 14-alpha demethylase family 2 members Genes Expression
130. Putative peroxidase 1 members Genes Expression
131. Putative poly(3 ADP-ribose) glycohydrolase 1 members Genes Expression
132. Putative preprotein translocase SECY protein 1 members Genes Expression
133. Putative presenilin homolog family 2 members Genes Expression
134. Putative protein transport protein SEC61 alpha subunit family 3 members Genes Expression
135. Putative receptor protein kinase family 2 members Genes Expression
136. Putative replication protein A1 1 members Genes Expression
137. Putative ribophorin I family 2 members Genes Expression
138. putative RING zinc finger protein family 3 members Genes Expression
139. Putative sensory transduction histidine kinase family 2 members Genes Expression
140. Putative tropinone reductase family 8 members Genes Expression
141. Putative ubiquitin carboxyl terminal hydrolase family 2 members Genes Expression
142. Receptor kinase-like protein family 307 members Genes Expression
143. Receptor protein kinase-like family 4 members Genes Expression
144. Receptor protein kinase-like protein family 2 members Genes Expression
145. Resistance-Nodulation-Cell Division (RND) Superfamily 2 members Genes Expression
146. Respiratory burst oxidase family 10 members Genes Expression
147. Reticuline oxidase-like family 4 members Genes Expression
148. Root Cap 1 1 members Genes Expression
149. SAURs 5 members Genes Expression
150. Secretory carrier membrane protein family 5 members Genes Expression
151. Senescence-associated protein homolog family 11 members Genes Expression
152. Serine O-acetyltransferase 1 members Genes Expression
153. Signal recognition particle receptor beta subunit-like family 2 members Genes Expression
154. Similar to CCS1 1 members Genes Expression
155. Similar to Mlo proteins family 14 members Genes Expression
156. Similarity to Triticum ABA induced membrane protein family 4 members Genes Expression
157. Single gene-encoded CBPs 11 members Genes Expression
158. Single Myb Histone (SMH) 5 members Genes Expression
159. Small Multidrug Resistance (SMR) Family 1 members Genes Expression
160. SNF1 related protein kinase family 3 members Genes Expression
161. Solute:Sodium Symporter (SSS) Family 1 members Genes Expression
162. Squalene epoxidase - like family 6 members Genes Expression
163. Strong similarity to beta-keto-Coa synthase family 15 members Genes Expression
164. SUBs (Short Under Blue Light) 1 members Genes Expression
165. Subtilisin-like Serine Proteases 55 members Genes Expression
166. Synaptobrevin -like protein family 9 members Genes Expression
167. TGA3-like 4 members Genes Expression
168. Type I MADS box 46 members Genes Expression
169. Ubiquitin conjugating enzyme-like family 3 members Genes Expression
170. Ubiquitin-conjugating enzyme, putative family 2 members Genes Expression
171. UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase-like protein family 2 members Genes Expression
172. Uncoupling protein family 4 members Genes Expression
173. Vacuolar sorting receptor family 7 members Genes Expression
174. Wax synthase-like protein family 12 members Genes Expression
175. WRKY Transcription Factor; Unclassified 1 members Genes Expression
176. Xyloglucan fucosyltransferase family 3 members Genes Expression

 
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