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Loss of a callose synthase results in salicylic acid-dependent disease resistance | |||||||||||
| Experiment Name: | Loss of a callose synthase results in salicylic acid-dependent disease resistance | ||||||||||
| Accession No. & GeneChip: | AT6, ATH1-121501 | ||||||||||
| Submitter: | Experimenter: Somerville, Shauna, submitted by Lishuang Shen | ||||||||||
| Experiment Type: | pathogen | ||||||||||
| Experiment Factor: | genotype pathogen isolates | ||||||||||
| Number of Replicates: | 4 | ||||||||||
| Quality Control Steps: | biological replicates | ||||||||||
| Quality Control Description: | None | ||||||||||
| Publication_id: | PubMed:
12920300
Science. 2003 Aug 15;301(5635):969-72. Loss of a callose synthase results in salicylic acid-dependent disease resistance. Nishimura MT, Stein M, Hou BH, Vogel JP, Edwards H, Somerville SC. | ||||||||||
| Last Update Time: | 2004-08-10 16:29:15 | ||||||||||
| Expression Data Access & Analysis: | Please select one action: 1. Batch download all data files at Download Center . 2. Browse Hybridizations and boxplots from experiment. 3. Visualization of hybridizations or treatment means with scatterplots and MvA plots. 4. Browse Samples from experiment. 5. Create Gene List by filter probe sets for differentially-expressed genes. 6. Pattern Recognition on filtered gene list. | ||||||||||
| Description: | This experiment is a deposition of GSE431 from GEO at NCBI. Following are the original experiment descriptions from GEO: Series GSE431 Query DataSets for GSE431 Status Public on Aug 15 2003 Title pmr4 vs. wild-type (May, 2003) Type repeat sample Description There were two genotypes: (1) Columbia-0, wild-type (C) (2) pmr4-1 mutant (P), callose synthase deficient mutant (Vogel and Somerville (2000) Proc. Natl. Acad. Sci., USA 97: 1897). There were two treatments: (1) uninoculated (U) (2) 3 days after inoculation with the powdery mildew pathogen, Erysiphe cichoracearum, race UCSC (I). There were four biological replicates, labeled 1, 2, 3 or 4. Examples of the sample labels are: CU1 = Columbia-0, uninoculated, replicate 1 CI2 = Columbia-0, 3 days after inoculation with powdery mildew, replicate 2 PU3 = pmr4-1, uninoculated, replicate 3 PI4 = pmr4-1, 3 days after inoculation with powdery mildew, replicate 4. In total, there were 16 Affymetrix ATH1 GeneChips (2 genotypes x 2 treatments x 4 biological replicates). Author Nishimura MT, Stein M, Hou B, Vogel JP, Edwards HH, Somerville SC Pubmed id 12920300 Submission date May 12 2003 Submitter name Somerville, Shauna Submitter email shauna@andrew2.stanford.edu Submitter institute Carnegie Institution of Washington Submitter department Plant Biology Submitter address 260 Panama Street Submitter city Stanford, CA 94305 USA Submitter phone 650-325-1521 Submitter web link http://carnegiedpb.stanford.edu/research/research_ssomerville.php Sample id GSM6227, GSM6544, GSM6571, GSM6572, GSM6573, GSM6574, GSM6575, GSM6576, GSM6577, GSM6578, GSM6579, GSM6580, GSM6581, GSM6582, GSM6583, GSM6584 | ||||||||||
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