Wheat GeneChip Exemplar: Ta.10069.1.S1_at
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Name
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Date last modified
| 2004-12-12 |
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Sequence Type
| Consensus sequence from Ta.10069.1
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Probe Sets
| Probe Sequences & Alignment
Probe sets from Ta.10069.1.S1_at:
1. Ta.10069.1.S1_at: Expression Details Probe-Level Intensity
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| Rice Genome Alignment | Genome Alignment at Gramene
On the Gramene entry page, under the "Location of hits" section, select one of the locations to go to the genome browser (ContigView) page, then under "Detailed view" section, select "arrays" menu and check the platforms to be displayed. |
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BLAST and EST alignment
Plant Sequence BLAST | 1. BarleyBase Blast 2. NCBI BLAST 3. EBI BLAST 4. GrainGenes BLAST 5. Gramene BLAST 6. TAIR BLAST |
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| Annotation |
1. BEST BLASTX UniProt: ASPR_HORVU, (P42210) Phytepsin precursor (EC 3.4.23.40) (Aspartic proteinase) Length = 508, Expect:0. match=311/412 aa. more
2. BEST BLASTN TIGR Wheat Gene Index: TC220292, similar to UP|ASPR_HORVU (P42210) Phytepsin precursor (Aspartic proteinase) , partial (88%) Length = 2293, Expect: 0, match=1736/1741. It may represent same contig. more
3. BEST TBLASTX Barley1 GeneChip Exemplar: Barley1_03144, Contig3144 (98 members) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 1717, Expect= 0, match=321/409 aa.
4. BEST TBLASTX ATH1 GeneChip Exemplar: 264344_at, ; |At1g11910; putative aspartic proteinase similar to GB:AAC49730;supported by full-length cDNA: Ceres:8972. Length = 1521, Expect= 0, match=192/276 aa. more
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BLAST Details |
TBLASTX vs Barley1 Exemplars | | # | Species | Subject Sequence Description | Expect | Identity/Match | Identity% | HSP
Details | | 1 | barley | Barley1_03144: Contig3144 (98 members) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 1717 | 0 | 321/409 | 78 | View | | 2 | barley | Barley1_04467: Contig4467 (41 members) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 2036 | 0 | 250/410 | 60 | View | | 3 | barley | Barley1_03526: Contig3526 (56 members) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 2049 | 0 | 168/273 | 61 | View | | 4 | barley | Barley1_02354: Contig2354 (2 members) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 416 | 6e-33 | 59/92 | 64 | View | | 5 | barley | Barley1_38563: Contig38563 (1 member:HU12E11u) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 598 | 7e-31 | 51/75 | 68 | View |
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| Nucleotide Sequence |
Total length: 1753
>Ta.10069.1.S1_at gb|BJ233195;
gtggtctgctcctcttccggtctcacttcatcggtattctctctctctctgtaatttgca
gctncgcggcgcaaccatgggaactggccgcctcgtgttccacctcctcctcctctccaa
cgtgctcctccatgccctcctcgccacgcccgcggagggccttgtccgcatcgcgctgaa
gaagcgaccagtcgacgagaacggcgtcgtcctcgtcgctggccgnctcaccggagatga
cgccgaggcaaagggccacgtcgtggcactgaagaactaccacaacgctcagtaccacgg
cgagatcggcatcggaacgccgccgcagaancttcaccgtcatcttcgacacaggcagct
ccaacctctgggtgccctcctccaagtgcttcctctcgattgcatgctacttccatgcga
gctacaaggccaagcggtccagcacgtacaagaagaatggaaaaatagttgcaattcagt
atggaactggtgcaatttctggctatgttagccaggacaatgtgcaagttggtgatgtan
ttgtgaaaaatcaggattttattgaagctaccagggaaccaagtattacttttatggttg
caaaatttgatggcatttttggtcttgggtttaaagaaatctcgaaaggtgatgttgtac
ctgtctggtataacatggttagccaaggcctagttagtagccctattttctcattgtggt
tgaacagacatgccggtgaagggcaagggggagaaattgtgtttggaggaattgatccta
atcatcataacggagatcatacatatgtccctgttactaggaagggatactggcagtttg
atatgggtgatgtcttgattggaggaaattccacaggattatgtgcgtctcgctgtgcag
ctatagcagattctggaacttcattgctttctggtcccacggcgataattactcaaataa
atgaaaagatcggtgcacctggggtagtcagccaagagtgcaaggccgttgtttctcagt
atgggcaacggatcctanatctgctgttaaaggagatggatccatcaaaaatatgctctt
tagtcggtctatgtactccagatggaacacaaggtgtaagggctggtagtcgaagtgtgc
tagatcatgaaggtgggagatcaaatgatgtcatgtgccatgcttgtgagatggctgttg
tatggatgacgaaccaacttgcaaagaatcaaactcaggatcttatttttaagtacatta
atcagctatgtgaccgtattcctagccctatgggagaatcatctgtggactgcggcagac
ttgcatccatgcctgacatcgctttctccatcgggggcaaacagtttgtgctgacaccag
agcaatatatcctgaagatcggtgagggggatgctacccagtgcatcagcggattcacgg
ccatggacattcctcgtccccgtggccctctctggatcctgggcgatatattcatgggag
cctaccataccgtcttcgactatggcaacatgaagattgggttcgcgaaggcggcatagg
gttcccccgtggtgggcggatgagccgcagagctgtctaatcttcaggtcggtttggtct
tgggcatgcaaagcatgtgtgtgcatatgttacatgcttaataatgctcgtatgatccga
gataataataaacctgtctgttatgatttgtccaatataatgaggcaggctttcatactc
annannnannggc
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