Rice GeneChip Exemplar: Os.10220.1.S1_at
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Name
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Date last modified
| 2005-01-10 |
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Sequence Type | Consensus sequence from Os.10220.1
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Probe Sets
| Probe Sequences & Alignment
Probe sets from Os.10220.1.S1_at: 1. Os.10220.1.S1_at: Expression Details Probe-Level Intensity |
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Rice Genome Alignment | Genome Alignment at Gramene
On the Gramene entry page, under the "Location of hits" section, select one of the locations to go to the genome browser (ContigView) page, then under "Detailed view" section, select "arrays" menu and check the platforms to be displayed. |
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BLAST and EST alignment Plant Sequence BLAST | 1. BarleyBase Blast 2. NCBI BLAST 3. EBI BLAST 4. GrainGenes BLAST 5. Gramene BLAST 6. TAIR BLAST |
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Annotation | 1. BEST BLASTX UniProt: BLASTX result for this exemplar against UniProt will be available soon. You may try BLAST at EBI
2. BEST BLASTN TIGR Rice Gene Index: TC250680, UP|Q7X993 (Q7X993) BZIP transcription factor, complete Length = 2209, Expect: 0, match=2189/2196. It may represent same contig.
3. BEST TBLASTX Barley1 GeneChip Exemplar: Barley1_05907, Contig5907 (9 members) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 1308, Expect= 0, match=215/232 aa. more
4. BEST TBLASTX ATH1 GeneChip Exemplar: 250671_at, ; |At5g06950; transcription factor HBP-1b homolog (sp|P43273) ; supported by cDNA: gi_217826_dbj_D10042.1_ATHAHBP1B Length = 993, Expect= 0, match=242/322 aa. more |
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BLAST Details |
BLASTN vs TIGR Rice Gene Index OGI Release 16 | # | Species | Subject Sequence Description | Expect | Identity/Match | Identity% | HSP Details | 1 | rice | TC250680: UP|Q7X993 (Q7X993) BZIP transcription factor, complete Length = 2209 | 0 | 2189/2196 | 99 | View | 2 | rice | TC252500: UP|Q6IVC3 (Q6IVC3) BZIP transcription factor, complete Length = 1963 | 0 | 749/892 | 83 | View | 3 | rice | CB658954: Length = 810 | 8e-93 | 376/441 | 85 | View |
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Nucleotide Sequence | Total length: 2207 >Os.10220.1.S1_at gb|AB051295.1 ctctctccacctcctccactctcccaccacnacgagaccttctcgangcttcctcccccc caaaccccttccgctcctcctcctcctcccaaatccaccacggcgacgccgccgccgcag agcccctagctcccggaggtccctcgcccccgccagctccgacggcctcacggaaggagg agtaacgtgggcgttgattggatttttttgttttccccccaccttgagtgagtctgtgcc gtttccccggcggcgagggagggcagagggctgatcatggtcgtgcgccgccggtgcctt gccgagatttcccccaaccgccaccgacgatcgttcacttggcacaaaggggagtagcac tgtccaagctgttgtggtccgtcagggagattggccaacctgtggggtttcagatcgaca taagtacgtcagtatttcagccatcgatcaatctggcggttcatagggctgtgcttgcaa cctttctggcagaaaggagagagcaaagtgatttgctgtctcctgttgattgtggcctgt tgaggcccagtaatggcagatgctagttcaaggactgacacatcgattgttgtagacaac gacgacaaaaaccaccagttagaaaacggacatagtggtgcagtcatggcttctaactct tcagatagatctgacagatctgacaaacttatggaccaaaagacaattcggcggcttgct caaaatcgtgaggcagcaagaaaaagtcggctgaggaaaaaggcatatgtgcaacaacta gagagcagtaagctgaagcttgcacagctagagcaggaacttcagaaagctcgtcagcag ggaatcttcatctctagctctggagaccagacccatgccatgagtggaaatggggcattg acttttgacttagaatacactagatggctcgaggagcaaaataagcagataaatgagttg aggacagcagtgaatgctcatgcaagtgacagtgaccttcgtcttattgttgatggcata atggcgcattatgacgaggtattcaaggttaagggtgtagctgcaaaggccgatgtgttt catatactttcaggcatgtggaagacacccgcagaaagatgcttcctgtggcttggtggt ttccgtccatctgagcttctaaagctcctagcaaatcacctcgaacctttaaccgagcag cagttgctgggattaaacaacctccaggaatcttctcagcaggcggaggatgcactttca caaggtatggaagcactgcagcaatctctggcagatactttggctggatctctcgnttca tcagggtcttctgggaatgtggcgaactacatgggtcagatggcaatggccatgggtaaa ctaggaacgctcgagaatttcctttgccaggcggacaacctgcgacagcagacattgcat caaatgcaacgaattctgacgatccggcaagcctcgcgtgctcttcttgccatacacgat tacttttcacgcttgcgtgctttgagttcgctgtggcttgctaggccacgggagtaacaa aatggtcatgtgtgcctgtgacgaggttagacgctcattttgatggacngcagataattg ggtttttccctgtacaattgtgtttggcagctgtggagctaaagttaaaaactgtaccta aagtggtgtatgcaaataggtgaagcctctaagtaagttataacgattgcattattgtgt tagcaataaaagttgggtaattcaggatgtgtcctgagttgttttgttgtagtagaagaa ctgcatgtagtggctggaaatgcagtgttgaatgtaactaaagctctgctgctcacgttg cataatgttgtgtagtaatagttagctagtgatgcccattttacctgcactcctctggga agctgaaactgcaacctgaagcaaccacggtgcagaagaccgcatgcatggtaaatgatt aaaaggatatatatgggctcaacatcgctgccaaatcctgagataatgaacaggcatgct aaactgctacttccacatgaaacntcccagttgacatgaagaatgagctgttcagtttta tggtttctgtgttgcactgtacataattcctgtacgggtctgaanttatcctgaaatcat gctaaactgcagaagcatatgaaatctccagaccggntgacatgaaa
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