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Sample exemplar is used here. Please input exemplar name in the text box below
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Mediacgo (M. sativa) GeneChip Exemplar:
Msa.1020.1.S1_at
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Name
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<!-- ========= 2. Date last modified ================= >
Date last modified
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2005-11-26 |
Sequence Type
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Consensus sequence from Msa.1020.1
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Probe Sets
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Probe Sequences & Alignment
Probe sets from
Msa.1020.1.S1_at:
1. Msa.1020.1.S1_at: Expression Details Probe-Level Intensity
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| Rice Genome Alignment |
Genome Alignment at Gramene
On the Gramene entry page, under the "Location of hits" section, select one of the locations to go to the genome browser (ContigView) page, then under "Detailed view" section,
select "arrays" menu and check the platforms to be displayed. |
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<!-- ========= 6. BLAST and EST alignment ================= >
BLAST and EST alignment
Plant Sequence BLAST |
1. BarleyBase Blast
2. NCBI BLAST
3. EBI BLAST
4. GrainGenes BLAST
5. Gramene BLAST
6. TAIR BLAST |
| Annotation |
1. BEST BLASTX UniProt: Q6PP98_SOYBN, (Q6PP98) Mitochondrial pyruvate dehydrogenase kinase isoform 2 (EC 2.7.1.99) Length = 369, Expect:2e-42. match=73/87 aa. more
2. BEST BLASTN TIGR Maize Gene Index: No qualifying BLAST match exist for this exemplar.
3. BEST TBLASTX Barley1 GeneChip Exemplar: Barley1_05728, Contig5728 (31 members) from HarvEST Triticeae v. 1.03 assembly 25 [Hordeum vulgare] Length = 1586, Expect= 2e-39, match=65/86 aa. more
4. BEST TBLASTX ATH1 GeneChip Exemplar: 258902_at, |At3g06483 putative pyruvate dehydrogenase kinase similar to pyruvate dehydrogenase kinase GB:AAC97601, [Arabidopsis thaliana] Length = 894, Expect= 2e-06, match=18/25 aa. more
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Nucleotide Sequence
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Total length: 623
>Msa.1020.1.S1_at affx|gi|50316674|gb|CO511800.1|CO511800
ggggactcaaatcatcaattctcaacaaaaactagcaattcacatttcccactttgcggc
aaaaccaaagtctcaatcttttcatctctcatctcatctttgatgataactatatacttt
tctttcattcactatcacaattcattattactatagtacaatttctctctctctttcttc
aacatggttgttattgttattgttacttgttagtttcagattctgtttttctattacaat
tacatgttcaaattccttggttagaagaaagaaaaaaaaagaacattttttttaaccatg
gctgcaaagaaagccattgaaacattctccaaaagcttgatagaagaagtacacaaatgg
gggttgtttcaaacaaacaggtgtgagtttaagatacatgatggattttggttctaaacc
aactccaaagaatttgttaatttctgcacagtttcttcataaggaacttgccattagaat
tgctagaagagctgttgagcttgaaaggcttccttgtgatttgtcacaaaaaccagctgt
tttgaaggttagagattggtacttggattcgttccgcgatattagatccttttctgagat
caaaaacatgaatgatgaaaagg
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