Barley1 GeneChip Exemplar: Barley1_18184
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Name
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Date last modified
| 2004-12-04 |
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Sequence Type
| Exemplar
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Probe Sets
| Probe Sequences & Alignment
Probe sets from Barley1_18184:
1. Contig18184_at: Expression Details Probe-Level Intensity
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Genomic Alignment with
Rice and Cereals | Genome Alignment at Gramene
On the Gramene rice genome browse page, check the "Barley1_Exemplar_GeneChip" box from "EST" menu to make it a default view option.
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BLAST and EST alignment
Plant Sequence BLAST | 1. PlantGDB 2. BarleyBase Blast 3. NCBI BLAST 4. GrainGenes BLAST on Mapped Wheat Ests etc 5. Gramene BLAST 6. EBI BLAST 7. TAIR BLAST |
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| Annotation |
1. BEST BLASTX UniProt: UFOG_HORVU, (P14726) Flavonol 3-O-glucosyltransferase (EC 2.4.1.91) (UDP-glucose flavonoid 3-O-glucosyltransferase) (Bronze-1) Length = 455, Expect:0. match=289/309 aa. more
2. BEST BLASTX NR: AAO43975.1, UDPglucose:flavonoid-3-oxy glucosyl transferase [Zea mays]
, Expect:0.
3. BEST BLASTX PLANTS: 10/14/03 1. sp|P14726 0 UFOG_HORVU Flavonol 3-O-glucosyltransferase (UDP-glucose flavonoid 3-O-glucosyltransferase) (Bronze-1) Length = 455; 2. emb|CAA33729.1 0 UDPglucose flavonol 3,0 glucosyl transferase [Hordeum vulgare subsp. vulg more
4. BEST BLASTN TIGR Barley Gene Index: TC136710, homologue to UP|UFOG_HORVU (P14726) Flavonol 3-O-glucosyltransferase (UDP-glucose flavonoid 3-O-glucosyltransferase) (Bronze-1) , partial (59%) Length = 884, Expect: 1452, match=884/884. It may represent same contig. more
5. BEST TBLASTX ATH1 GeneChip Exemplar: 246468_at, ; at|At5g17050; UDP glucose:flavonoid 3-o-glucosyltransferase -like protein UDP glucose:flavonoid 3-o-glucosyltransferase, Vitis vinifera, EMBL:AF000372 Length = 1383, Expect= 2e-81, match=43/66 aa. more
Barley1 exemplars and BEST BLASTX NR results are kindly provided by Dr. Timothy Close from HarvEST:Barley. BLASTX NR is based on contig assembly #31, and other BLASTs are based on contig assembly #25 from HarvEST:Barley.
up to 5 BLAST top hits for all types of BLASTs. |
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| Nucleotide Sequence |
Total length: 1452
>Barley1_18184
TGGCGCCCCCGCCGCCGCACATCGCCGTGGTGGCCTTCCCCTTCAGCTCCCACGCGGCCG
TGCTCTTCTCGTTCGCGCGCGCCCTCGCCGCCGCCGCGCCGGCCGGGACGAGCCTCTCGT
TCCTCACCACCGCCGACAACGCCGCCCAGCTCCGCAAGGCCGGCGCGCTCCCCGGCAACC
TGCGCTTCGTCGAGGTCCCGGACGGGGTGCCGCCGGGCGAGACGTCGTGCCTGTCGCCTC
CGCGCCGGATGGATCTCTTCATGGCGGCGGCCGAGGCCGGCGGGGTCAGGGTCGGGCTCG
AGGCGGCATGCGCCTCCGCCGGTGGCGCCAGGGTGAGCTGCGTCGTCGGGGACGCGTTCG
TCTGGACCGCGGACGCGGCCTCCGCTGCCGGGGCGCCGTGGGTGGCCGTCTGGACCGCCG
CTTCCTGCGCCCTCCTCGCGCACCTCCGCACCGACGCGCTCCGCCGGGACGTCGGCGATC
AGGCGCCAGCCGAGCCGACGAGCTGCTGGTCGCGCACGCCGGCCTCGGCGGCTACCGCGT
CCGGGACCTCCCCGACGGCGTCGTCTCCGGCGACTTCAACTACGTCATCAGCCTCCTGGT
CCACCGCCAGGCGCAGCGCCTTCCTAAAGCGGCCACGGCCGTCGCCCTCAACACCTTCCC
GGGCCTCGACCCGCCCGACCTCACCGCCGCCCTCGCCGCCGAGCTCCCGAACTGCCAGCC
CCTCGGCCCCTACCACCTCCTCCCGGGCGCAGAGCCCACAGCAGACACCAACGAAGCGCC
AGCCGACCCGCACGGCTGCCTCGCCTGGCTCGACCGCCGGCCCGCGCGGTCCGTCGCGTA
CGTCAGCTTCGGCACGAACGCCACGGCGCGGCCGGACGAGCTGCAGGAGCTCGCGGCCGG
GCTGGAGGCGAGCGGCGCGCCGTTCCTGTGGTCGCTGCGCGAGGAGTCGTGGCCGCTGCT
CCCGCCGGGGTTCCTGGAGCGCGCGCCGGGCCTCGTGGTGCCGTGGGCGCCGCAGGTGGG
CGTGCTGCGGCACGCCGCGGTCGGCGCGTTCGTGACGCACGCCGGGTGGGCGTCGGTGAT
GGAGGGAGTGTCCAGCGGCGTGCCCATGGCGTGCCGGCCCTTCTTCGGCGACCAGACGAT
GAACGCGCGGTCGGTGGCCAGTGTGTGGGGCTTCGGCACGGCGTTCGACGGGCCGATGAC
GCGCGGCGCCGTGGCAAACGCGGTGGCGACGCTGCTGCGCGGGGAGGATGGGGAGCGGAT
GAGGGCAAAGGCGCAGGAGCTGCAGGCCATGGTGGGCAAGGCGTTCGAGCCCGACGGCGG
CTGCAGGAAGAACTTCGACGAGTTTGTCGAGATAGTTTGTCGGGTGTGATCTTGTACTCG
TACAAATGCTTAGAACTCTATGGGACCGATTACGTGTAAGTCGACCGTCTTTTTTAAAAA
AAAAAAAAAAAA
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ESTScan2.0 Prediction ( Arabidopsis model)
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ESTScan2 CDS Prediction:
Barley1_18184 -255 1 1419 contig from HarvEST v. 1.03 assembly 25 [Hordeum vulgare]
XXTGGCGCCCCCGCCGCCGCACATCGCCGTGGTGGCCTTCCCCTTCAGCTCCCACGCGGC
CGTGCTCTTCTCGTTCGCGCgCGCCCTCGCCGCCGCCGCGCCGGCCGGGACGAGCCTCTC
GTTCCTCACCACCGCCGACAACGCCGCCCAGCTCCGCAAGGCCGGCGCXGCTCCCCGGCA
ACCTGCGCTTCGTCGAGGTCCCGGACGGGGTGCCGCCGGGCGAGACGTCGTGCCTGTCGC
CTCCGCGCCGGAtGGATCTCTTCATGGCGGCGGCCGAGGCCGGCGGGGTCAGGGTCGGGC
TCGAGGCGGCATGCGCCTCCGCCGGTGGCGCCAGGGTGAGCTGCGTCGTCGGGGACGCGT
TCGTCTGGACCGCGGACGCGGCCTCCGCTGCCGGGGCGCCGTGGGTGGCCGTCTGGACCG
CCGCTTCCTGCGCCCTCCTCGCgCACCTCCGCACCGACGCGCTCCGCCGGGACGTCGGCG
ATCAGGCGCCAGCCGAGCCGACGAGCTGCTGGTCGCGCaCGCCGGCCTCGGCGGCTACCG
CGTCCGGGACCTCCCCGACGGCGTCGTCTCCGGCGACTTCAACTACGTCATCAGCCTCCT
GGTCCACCGCCAGGCGCAGCGCCTTCCTAAAGCGGCCACGGCCGTCGCCCTCAACACCTT
CCCGGGCCTCGACCCGCCCGACCTCACCGCCGCCCTCGCCGCCGAGCTCCCGAACTGCCA
GCCCCTCGGCCCCTACCACCTCCTCCCGGGCGCAGAGCCCACAGCAGACACCAACGAAGC
GCCAGCCGACCCGCACGGCTGCCTCGCCTGGCTCGACCGCCGGCCCGCGCGGTCCGTCGC
GTACGTCAGCTTCGGCACGAACGCCACGGCGXCGGCCGGACGAGCTGCAGGAGCTCGCGG
CCGGGCTGGAGGCGAGCGGCGCGCCGTTCCTGTGGTCGCTGCGCGAGGAGTCGTGGCCGC
TGCTCCCGCCGGGGTTCCTGGAGCGCGCGCCGGGCCTCGTGGTGCCGTGGGCGCCGCAGG
TGGGCGTGCTGCGGCACGCCGCGGtCGGCGCGTTCGTGACGCACGCCGGGTGGGCGTCGG
TGATGGAGGGAGTGTCCAGCGGCGTGCCCATGGCGTGCCGGCCCTTCTTCGGCGACCAGA
CGATGAACGCGCGGTCGGTGGCCAGTGTGTGGGGCTTCGGCACGGCGTTCGACGGGCCGA
TGACGCGCGGCGCCGTGGCAAACGCGGTGGCGACGCTGCTGCGCGGGGAGGATGGGGAGC
GGATGAGGGCAAAGGCGCAGGAGCTGCAGGCCATGGTGGGCAAGGCGTTCGAGCCCGACG
GCGGCTGCAGGAAGAACTTCGACGAGTTTGTCGAXGATAGTTTGTCGGGTGTGATCTTGT
ACTCGTACAAATGCTTAGAACTCTATGGGACCGATTACGTGTAA
Protein Prediction:
GAPAAAHRRGGLPLQLPRGRALLVRAALAAAAPAGTSLSFLTTADNAAQLRKAGAAPRQP
ALRRGPGRGAAGRDVVPVASAPEDLFMAAAEAGGVRVGLEAACASAGGARVSCVVGDAFV
WTADAASAAGAPWVAVWTAASCALLATSAPTRSAGTSAIRRQPSRRAAGRAAGLGGYRVR
DLPDGVVSGDFNYVISLLVHRQAQRLPKAATAVALNTFPGLDPPDLTAALAAELPNCQPL
GPYHLLPGAEPTADTNEAPADPHGCLAWLDRRPARSVAYVSFGTNATAXAGRAAGARGRA
GGERRAVPVVAARGVVAAAPAGVPGARAGPRGAVGAAGGRAAARRGGAFVTHAGWASVME
GVSSGVPMACRPFFGDQTMNARSVASVWGFGTAFDGPMTRGAVANAVATLLRGEDGERMR
AKAQELQAMVGKAFEPDGGCRKNFDEFVXDSLSGVILYSYKCLELYGTDYV
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